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Bioinformatics DotCa
Добавлен 26 июл 2016
Bioinformatics.ca is dedicated to creating and maintaining a skilled bioinformatics workforce through open content. Our workshops are recorded and posted here and our materials can be found at bioinformaticsdotca.github.io.
If you are interested in attending a workshop, you can find our current schedule at bioinformatics.ca/.
If you are interested in attending a workshop, you can find our current schedule at bioinformatics.ca/.
CBW Pathway and Network Analysis 2024 | 06: Cell-Cell Communication
Canadian Bioinformatics Workshop series:
- Pathway and Network Analysis (PNA), June 26-28, 2024
- Cell-Cell Communication (Gregory Schwartz)
- Day 2, Module 6
Visit us at bioinformatics.ca
Lecture slides and class materials for this workshop are available at bioinformaticsdotca.github.io/PNA_2024
Need more info? Contact us at support@bioinformatics.ca
Follow us on Twitter @bioinfodotca
Music: Carthy Groove by Javolenus (c) copyright 2021
Licensed under a Creative Commons Attribution-Noncommercial (3.0) license. ccmixter.org/files/Javolenus/63699
- Pathway and Network Analysis (PNA), June 26-28, 2024
- Cell-Cell Communication (Gregory Schwartz)
- Day 2, Module 6
Visit us at bioinformatics.ca
Lecture slides and class materials for this workshop are available at bioinformaticsdotca.github.io/PNA_2024
Need more info? Contact us at support@bioinformatics.ca
Follow us on Twitter @bioinfodotca
Music: Carthy Groove by Javolenus (c) copyright 2021
Licensed under a Creative Commons Attribution-Noncommercial (3.0) license. ccmixter.org/files/Javolenus/63699
Просмотров: 106
Видео
CBW Pathway and Network Analysis 2024 | 05: Gene Function Prediction
Просмотров 499 часов назад
Canadian Bioinformatics Workshop series: - Pathway and Network Analysis (PNA), June 26-28, 2024 - Gene Function Prediction (Ruth Isserlin, material by Veronique Voisin) - Day 2, Module 5 Visit us at bioinformatics.ca Lecture slides and class materials for this workshop are available at bioinformaticsdotca.github.io/PNA_2024 Need more info? Contact us at support@bioinformatics.ca Follow us on Tw...
CBW Pathway and Network Analysis 2024 | 02: Finding Over-Represented Pathways in Gene Lists
Просмотров 419 часов назад
Canadian Bioinformatics Workshop series: - Pathway and Network Analysis (PNA), June 26-28, 2024 - Finding Over-Represented Pathways in Gene Lists (Veronique Voisin) - Day 1, Module 2 Visit us at bioinformatics.ca Lecture slides and class materials for this workshop are available at bioinformaticsdotca.github.io/PNA_2024 Need more info? Contact us at support@bioinformatics.ca Follow us on Twitte...
CBW Pathway and Network Analysis 2024 | 04: More Depth on Pathway and Network Analysis
Просмотров 609 часов назад
Canadian Bioinformatics Workshop series: - Pathway and Network Analysis (PNA), June 26-28, 2024 - More Depth on Pathway and Network Analysis (Lincoln Stein) - Day 2, Module 4 Visit us at bioinformatics.ca Lecture slides and class materials for this workshop are available at bioinformaticsdotca.github.io/PNA_2024 Need more info? Contact us at support@bioinformatics.ca Follow us on Twitter @bioin...
CBW Pathway and Network Analysis 2024 | 03.2: EnrichmentMap
Просмотров 5112 часов назад
Canadian Bioinformatics Workshop series: - Pathway and Network Analysis (PNA), June 26-28, 2024 - EnrichmentMap (Ruth Isserlin) - Day 1, Module 3.2 Visit us at bioinformatics.ca Lecture slides and class materials for this workshop are available at bioinformaticsdotca.github.io/PNA_2024 Need more info? Contact us at support@bioinformatics.ca Follow us on Twitter @bioinfodotca Music: Carthy Groov...
CBW Pathway and Network Analysis 2024 | 03.1: Network Visualization and Analysis with Cytoscape
Просмотров 5112 часов назад
Canadian Bioinformatics Workshop series: - Pathway and Network Analysis (PNA), June 26-28, 2024 - Network Visualization and Analysis with Cytoscape (Ruth Isserlin) - Day 1, Module 3.1 Visit us at bioinformatics.ca Lecture slides and class materials for this workshop are available at bioinformaticsdotca.github.io/PNA_2024 Need more info? Contact us at support@bioinformatics.ca Follow us on Twitt...
CBW Pathway and Network Analysis 2024 | 01: Introduction to Pathway and Network Analysis
Просмотров 9212 часов назад
Canadian Bioinformatics Workshop series: - Pathway and Network Analysis (PNA), June 26-28, 2024 - Introduction to Pathway and Network Analysis (Gary Bader) - Day 1, Module 1 Visit us at bioinformatics.ca Lecture slides and class materials for this workshop are available at bioinformaticsdotca.github.io/PNA_2024 Need more info? Contact us at support@bioinformatics.ca Follow us on Twitter @bioinf...
CBW Single Cell RNA-seq Analysis 2024 | 06: Data Set Integration
Просмотров 8216 часов назад
Canadian Bioinformatics Workshop series: - Single Cell RNA-Seq Analysis (scRNA), June 20-21, 2024 - Data Set Integration (Gary Bader) - Day 2, Module 6 Visit us at bioinformatics.ca Lecture slides and class materials for this workshop are available at bioinformaticsdotca.github.io/scRNA_2024 Need more info? Contact us at support@bioinformatics.ca Follow us on Twitter @bioinfodotca Music: Carthy...
CBW Single Cell RNA-seq Analysis 2024 | 05: Biological Analyses
Просмотров 153День назад
Canadian Bioinformatics Workshop series: - Single Cell RNA-Seq Analysis (scRNA), June 20-21, 2024 - Biological Analyses (Tallulah Andrews) - Day 2, Module 5 Visit us at bioinformatics.ca Lecture slides and class materials for this workshop are available at bioinformaticsdotca.github.io/scRNA_2024 Need more info? Contact us at support@bioinformatics.ca Follow us on Twitter @bioinfodotca Music: C...
CBW Single Cell RNA-seq Analysis 2024 | 04: Normalization & Confounders
Просмотров 80День назад
Canadian Bioinformatics Workshop series: - Single Cell RNA-Seq Analysis (scRNA), June 20-21, 2024 - Normalization & Confounders (Tallulah Andrews) - Day 2, Module 4 Visit us at bioinformatics.ca Lecture slides and class materials for this workshop are available at bioinformaticsdotca.github.io/scRNA_2024 Need more info? Contact us at support@bioinformatics.ca Follow us on Twitter @bioinfodotca ...
CBW Single Cell RNA-seq Analysis 2024 | 03: scRNAseq Data Structures & Quality Control
Просмотров 97День назад
Canadian Bioinformatics Workshop series: - Single Cell RNA-Seq Analysis (scRNA), June 20-21, 2024 - scRNAseq Data Structures & Quality Control (Tallulah Andrews) - Day 1, Module 3 Visit us at bioinformatics.ca Lecture slides and class materials for this workshop are available at bioinformaticsdotca.github.io/scRNA_2024 Need more info? Contact us at support@bioinformatics.ca Follow us on Twitter...
CBW Single Cell RNA-seq Analysis 2024 | 02: Read Quantification
Просмотров 78День назад
Canadian Bioinformatics Workshop series: - Single Cell RNA-Seq Analysis (scRNA), June 20-21, 2024 - Read Quantification (Tallulah Andrews) - Day 1, Module 2 Visit us at bioinformatics.ca Lecture slides and class materials for this workshop are available at bioinformaticsdotca.github.io/scRNA_2024 Need more info? Contact us at support@bioinformatics.ca Follow us on Twitter @bioinfodotca Music: C...
CBW Single Cell RNA-seq Analysis 2024 | 01: Introduction to Single Cell RNA-seq
Просмотров 162День назад
Canadian Bioinformatics Workshop series: - Single Cell RNA-Seq Analysis (scRNA), June 20-21, 2024 - Introduction to Single Cell RNA-seq (Trevor Pugh) - Day 1, Module 1 Visit us at bioinformatics.ca Lecture slides and class materials for this workshop are available at bioinformaticsdotca.github.io/scRNA_2024 Need more info? Contact us at support@bioinformatics.ca Follow us on Twitter @bioinfodot...
CBW RNA-seq Analysis 2024 | 03: Abundance Estimation and Differential Expression
Просмотров 111День назад
Canadian Bioinformatics Workshop series: - RNA-Seq Analysis (RNA), June 17-19, 2024 - Abundance Estimation and Differential Expression (Obi Griffiith) - Day 2, Module 3 Visit us at bioinformatics.ca Lecture slides and class materials for this workshop are available at bioinformaticsdotca.github.io/RNA_2024 Need more info? Contact us at support@bioinformatics.ca Follow us on Twitter @bioinfodotc...
CBW RNA-seq Analysis 2024 | 02.2: SAM/BAM/BED File Formats
Просмотров 49День назад
Canadian Bioinformatics Workshop series: - RNA-Seq Analysis (RNA), June 17-19, 2024 - SAM/BAM/BED File Formats (Obi Griffiith) - Day 2, Module 2.2 Visit us at bioinformatics.ca Lecture slides and class materials for this workshop are available at bioinformaticsdotca.github.io/RNA_2024 Need more info? Contact us at support@bioinformatics.ca Follow us on Twitter @bioinfodotca Music: Carthy Groove...
CBW RNA-seq Analysis 2024 | 02.1: Alignment
Просмотров 54День назад
CBW RNA-seq Analysis 2024 | 02.1: Alignment
CBW RNA-seq Analysis 2024 | 01: Introduction to RNA Sequencing
Просмотров 26714 дней назад
CBW RNA-seq Analysis 2024 | 01: Introduction to RNA Sequencing
CBW Analysis Using R 2024 | 04: Basic Differential Expression Analysis
Просмотров 15314 дней назад
CBW Analysis Using R 2024 | 04: Basic Differential Expression Analysis
CBW Analysis Using R 2024 | 03: Linear Mixed Models and Evaluation
Просмотров 7014 дней назад
CBW Analysis Using R 2024 | 03: Linear Mixed Models and Evaluation
CBW Analysis Using R 2024 | 02: Dimensionality Reduction
Просмотров 12314 дней назад
CBW Analysis Using R 2024 | 02: Dimensionality Reduction
CBW Analysis Using R 2024 | 01: Exploratory Data Analysis and Introducing Clustering
Просмотров 15214 дней назад
CBW Analysis Using R 2024 | 01: Exploratory Data Analysis and Introducing Clustering
CBW Introduction to R 2024 | 01: Getting To Know R
Просмотров 22914 дней назад
CBW Introduction to R 2024 | 01: Getting To Know R
Advanced Microbiome Analysis 2024 | 04: Advanced Microbiome Statistics
Просмотров 184Месяц назад
Advanced Microbiome Analysis 2024 | 04: Advanced Microbiome Statistics
Advanced Microbiome Analysis 2024 | 03: Metagenomic Functional Annotation
Просмотров 188Месяц назад
Advanced Microbiome Analysis 2024 | 03: Metagenomic Functional Annotation
Advanced Microbiome Analysis 2024 | 02: MAG Assembly and Binning
Просмотров 180Месяц назад
Advanced Microbiome Analysis 2024 | 02: MAG Assembly and Binning
Advanced Microbiome Analysis 2024 | 01: Introduction to MGS and Read-Based Profiling
Просмотров 285Месяц назад
Advanced Microbiome Analysis 2024 | 01: Introduction to MGS and Read-Based Profiling
Beginner Microbiome Analysis 2024 | 04: Functional Prediction and Additional Analyses
Просмотров 210Месяц назад
Beginner Microbiome Analysis 2024 | 04: Functional Prediction and Additional Analyses
Beginner Microbiome Analysis 2024 | 03: Microbiome Statistics and Visualizations
Просмотров 155Месяц назад
Beginner Microbiome Analysis 2024 | 03: Microbiome Statistics and Visualizations
Beginner Microbiome Analysis 2024 | 02: Marker Gene Profiling
Просмотров 229Месяц назад
Beginner Microbiome Analysis 2024 | 02: Marker Gene Profiling
Beginner Microbiome Analysis 2024 | 01: Introduction to Sequencing Data Analysis
Просмотров 434Месяц назад
Beginner Microbiome Analysis 2024 | 01: Introduction to Sequencing Data Analysis
This helped a lot! Thank you
Thanks so much. when the next lecture
There was only one lecture in Intro to R 2024. All other material is available at the link in the description.
This is well explained and very informative
Video to make wonders ❤
Great video thnx for sharing <3
In this series, voice is breaking between a lot... Please ask the speakers to speak to microphone...
what is this channel about? I am interested in bioinfomatics in canada and i'm currently in undergrad and wanted to know more about the feild.
This is the RUclips channel for the Canadian Bioinformatics Workshops. The workshops are offered every year online and across Canada; lecture recordings are posted here and course materials are posted at our student website (linked in video descriptions).
Great channel
Thanks to the Bioinformatics DotCa team for making this wonderful series of videos public.
Hi thank you for this valuable workshop. I would like to ask if the functional analysis for untarget metabolomics can also be applied for NMR data? Thank you.
Good comprehensive video. One comment regarding differential expression analysis post-integration (starting at 56:27). In either bulk or single-cell sequencing, most tools highly recommend NOT doing DE analysis on corrected data, exactly because of the concerns regarding under- or over-correction and removing potential biological variation. If you read the literature around older batch correction tools such as ComBat, most recommend that DE analysis correct for batch effects within the statistical model (i.e. including a model of ~ Batch + Condition). Obviously, Seurat doesn't have that functionality, but if you perform pseudobulk aggregation for DE analysis (literature suggests this is more statistically sound), then tools capable of including batch effects in the regression model (DESeq2, edgeR, limma-voom, etc.) are available.
Hello thank you for the lecture. I would like to ask which metabolite set library I should use for enrichment analysis if I am doing human cell extract metabolomics? Thank you.
Excellent lecture. Thank you
Very helpful lecture
A million dollar lecture. Thank you 👍👍
Thank you so much!
hello, do you have de DOI or any information about the comparation between RNA shield and RNA later that was shown in the presentation? thanks
Thanks a lot for sharing these materials online. Learning bioinformatics by myself in Kenya
List of DBs to use in metabolomics
thank you so much❣
Very intersting and informative tutorial! Thanks! I'd be happy if your email is avaipable.
did they remove the analysis report feature from this version I have five and can't find it
Does the PPT available, Hamza bhai?
thank you
Thanks!!!
bhai speak slower
Can you please upload a tutorial on EnrichmentMap with GSEA data results and network analysis? And how to generate a heat map from the GSEA data pathways. I would really appreciate it. Great tutorial on this one.
Wonderful
I need help finding sessions two and three of introduction to R. Can you help?
Intro to R only had two lectures (module 1 and module 4); the remaining material was taught through code-along R Markdown files. You can find them at the course material link in the description. Hope this helps!
@@bioinformaticsdotca Thank You 😇
Great 👍
this is great! Thank you
Excellent video. Thanks for sharing!
Hi, I have some questions regarding this. I am trying to make my own network. I have got 1000 gene IDs which are sorted in 6 clusters. All ID's contain descriptive information about the gene, and have got relative expressions for 8 different times (healthy vs sick). I have got all this data, but do not know how to import it in the right way into cytoscape. Could you help me with this? With kind regards, Jip
good overview.
bravo!
Excellent presentation!
thank you!
I really want to thank you for your lecture!!
Can we analyse LC MS- MS data in meraboanalist?
I know he's brilliant...but boy oh boy...his explanation is in ASCI character ;) I wish Jared could teach the whole course :(
Warning message: package ‘ggplot2’ was built under R version 4.1.3 Please I got that error message, how do I go about it. Thank you
I suggest you contact the instructor directly and ask her: Lauren Erdman <larunerdman1@gmail.com>. Get back to us if you don't get an answer. (course_info@bioinformatics.ca)
Just a warning message so should be fine to proceed. Errors and warnings are distinct in R and warnings are just there to let you know some important information.
Hi! Thank you for making these resources openly available. I am following this series/workshop by myself (I was not registrant) and I feel this section should follow (as in go after) the section in the "CBW’s INtroduction to R workshop - 02: Your second script" video.
Dear drJuanSanAr, thank you for your note. I have fixed it. Hope others will now appreciate the correct flow! All the best, @bioinfodotca
Hi, do you have time stamps for the workshop ?
What do you mean? When it was done? This workshop is from last week, as noted above: June 21 - 22 2021
@@FrancisOuellette_bffo On the video, so people can move through the workshop and skips parts and go to bits they need to learn or relearn. E.g. 59:26 Starts Creating Factors. Do you get what I mean ?
@@alialijama9098 Yes, I do -- I have not done that, but it is an excellent idea ... I will consider ... In my (absent) free time ... But yes, it would be a great addition. Maybe for a summer student. Those timestamps seem to be a lot of work. Are there video tools to help with that? (let me search -- but be free to point) -- Just found this: ruclips.net/video/FOMWgFlmo-8/видео.html ... Will look into it further. Thank you for the suggestion -- great idea!
@@FrancisOuellette_bffo I am pretty sure there are, I have seen Freecodecamp use them all the time. Lots of them, see below. You're welcome. I would believe there should be an easier way than getting someone else to do it. ruclips.net/user/results?search_query=how+to+create+timestamps+on+youtube
@@FrancisOuellette_bffo ruclips.net/video/yfEdhlBuxCU/видео.html
Thank you so much!! ❤️
Great!!!
Wow! I am really impressed with this course. Presented well with details!
good
Dr Laura Hug is an amazing speaker- explains clearly and concisely
Thank you, it was very helpful!
Great lecture.